Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015923706.1_cds_XP_016472245.1_64499
CDS Infomation

[gene=LOC107794279] [db_xref=GeneID:107794279] [protein=probable indole-3-acetic acid-amido synthetase GH3.1] [protein_id=XP_016472245.1] [location=complement(join(32294..33659,33777..33878,34129..34448))] [gbkey=CDS]
Sequence

ATGGCTGTTGATTCGGTACTATCTTCACCATTGGGTCCTCCTGCATGTGAGAAAGACGCA
AAGGCACTTCAATTCATCGAAGAGATGACTAGAAATGCTGATGCCGTCCAAGAAAGAGTC
TTGAATGAGATATTGACTCGAAACTCACAAACTGAGTACCTTAAGCGCTTTAAACTTGAC
GGCGTCAGTGACCCTGAAACCTTTAAAAACAAAATTCCGGTCGTAACTTACGAAGATCTT
CAGCCTGAGATCCAACGGATTGCTAACGGCGACCGTTCTCCTATCCTATCAGCTCATCCC
ATCTCTGAATTCCTCACTAGCTCTGGAACGTCAGCTGGCGAAAGGAAACTTATGCCAACA
ATTAAAGAAGAGTTGGATCGTCGCCAGCTACTTTACAGTCTTCTTATGCCTGTTATGAAC
CTGTACGTGCCTGGATTAGACAAAGGCAAAGGACTATACTTCTTATTTATCAAGTCCGAG
ACGAAAACGCCTGGTGGGCTATTGGCAAGACCAGTACTCACAAGCTATTACAAAAGTGAA
CATTTCAAAAGAAGACCACATGACCCGTACAATGTTTACACCAGCCCAAATGAGGCCATC
CTTTGTGCAGACTCCTTTCAGAGTATGTACACTCAAATGCTCTGCGGTCTCTACGAGCGC
GAGCAAGTTCTTCGCCTTGGTGCGGTCTTTGCCTCGGGCCTTGTCCGAGCCATTCGGTTC
TTGCAACTCCATTGGCCACAACTCGCTCATGACATTCGAACAGGGACTTTGAACCCCGAA
ATTACCGACCCCTCAATTTGTGAACGCATGGGTCTGGTTATGAGACCAAATCCAAAGCTA
GCCGATTTTGTTACCGATGAATGTTCTAATGAAAACTGGGAAGGAATTATCACGAGAATT
TGGCCTAAGACAAAGTACCTTGACGTAATTGTCACGGGTGCTATGGCTCAATATATTCCT
ACTCTGGATTATTACAGTGGTGGTTTACCAAAGGCGTGTACTATGTACGCAGCTTCCGAG
TGTTACTTTGGACTCAATTTAAATCCCATGTGTAAGCCCTCGGAAGTTTCGTACACAATC
ATGCCGAACATGGGTTACTTTGAATTCTTACCCCATGATCCTAACTCATCTCGTGACTCA
ACTCGTAAACTTGTTGACCTTGTCGACGTTGAAGTTGGGAAAGAGTATGAACTCGTCATC
ACGACCTATGCGGGATTATACCGTTACAGAGTCGGTGATATACTTCGTGTCACTGGGTTT
CATAACTCAGCGCCGCAGTTCCATTTCGTGAGGAGGAAAAATGTTCTATTGAGCATTGAT
TCGGACAAGACGGACGAGGCCGAATTACAGAGAGCCGTGGAAAATGCTTCAAAACTTCTT
AAGGAATTCAACACTAGCGTGGTGGAGTACACAAGTTATGCAGATACAAAGACAATTCCG
GGTCATTACGTGATTTATTGGGAGTTATTAATGAAGGATTTAAACAATTCTCCTAGTGAC
GAAGTGTTAAACAAGTGTTGTTTGGCCATGGAAGAGTCACTTAACACAGTGTACAGACAA
GGACGAGTTGCTTGCAATTCAATTGGTCCGTTGGAAATTAGAATGGTGAAAAATGGCACA
TTTGAAGAACTAATGGATTATGCAATTTCAAGGGGTGCTTCAATTAACCAATATAAGGTG
CCAAGATGTGTTAGTTTTGCACCTATTTTGGAACTTCTTGACTCAAGAGTAATGTCAAGA
CACTTTAGCCCATCGTTGCCTCAATGGACACCAGAACGGCGTCGTTGA

Peptide Sequence

PEP ID

XP_016472245.1
PEP Infomation

PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Nicotiana tabacum]
Sequence

MAVDSVLSSPLGPPACEKDAKALQFIEEMTRNADAVQERVLNEILTRNSQTEYLKRFKLD
GVSDPETFKNKIPVVTYEDLQPEIQRIANGDRSPILSAHPISEFLTSSGTSAGERKLMPT
IKEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFIKSETKTPGGLLARPVLTSYYKSE
HFKRRPHDPYNVYTSPNEAILCADSFQSMYTQMLCGLYEREQVLRLGAVFASGLVRAIRF
LQLHWPQLAHDIRTGTLNPEITDPSICERMGLVMRPNPKLADFVTDECSNENWEGIITRI
WPKTKYLDVIVTGAMAQYIPTLDYYSGGLPKACTMYAASECYFGLNLNPMCKPSEVSYTI
MPNMGYFEFLPHDPNSSRDSTRKLVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGF
HNSAPQFHFVRRKNVLLSIDSDKTDEAELQRAVENASKLLKEFNTSVVEYTSYADTKTIP
GHYVIYWELLMKDLNNSPSDEVLNKCCLAMEESLNTVYRQGRVACNSIGPLEIRMVKNGT
FEELMDYAISRGASINQYKVPRCVSFAPILELLDSRVMSRHFSPSLPQWTPERRR

Transcript Sequence

Gene sequence data has not been registered.